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Imported references include Full Framework assemblies
When you build and later deploy a VS2008 SmartDevice Project using PocketMEF, there will be some Full Framework DLLs deployed with your project assemblies. This is due to the fact, that PocketMEF was not targeted at SmartDevice during creation of the porjects.
I had to rebuild both PocketMEF projects and copied over all source files to ensure that only Compact Framework refernces are referenced.
The other issue is that there is NO NEED for a CE PocketMEF, as CE and SmartDevice share the same compact framework in regards of PocketMEF usage.